Available endpoints

1. /targets/count

   Show count of targets.

   Example: /targets/count

Batches

1. /batches

   Get list of batches and count of targets per batch

   Example: /batches
2. /batch/:batchid

   Get target list from batch

   Example: /batch/set526

Targets

1. /targets

   Get target list as json (only first page, same as /targets/1)

   Example: /targets
2. /targets/:page

   Get target list as json, used for pagination.

   Example: /targets/4
3. /target/:targetId

   JSON with information about specific target

   Example: /target/IDP90283
4. /subtargets/:targetId

   List of subtargets of specific target

   Example: /subtargets/IDP90283
5. /clones/:targetId

   List of clones of specific target

   Example: /clones/IDP90283
6. /search/target/ncbi/:ncbi_acc

   List of targets matching given NCBI accession, returns empty array if there are no matches

   Example: /search/target/ncbi/DS984767.1

Species

1. /species

   List of tax IDs and species

   Example: /species
2. /speciesfull

   List of species with full details

   Example: /speciesfull
3. /speciescount

   List of species and count of targets for each

   Example: /speciescount
4. /targets/species/:taxid

   List of targets for given taxon id

   Example: /targets/species/2697049

Structures

1. /structures

   List of all structures

   Example: /structures
2. /structures/:stype

   List of all structures of given type (xray|em|nmr). For all other stype will return full list of structures

   Example: /structures/nmr
3. /structures/target/:targetid

   List of structures for target

   Example: /structures/target/IDP02499

Publications

1. /publications

   List of all publications, reverse chronological order

   Example: /publications
2. /publications/target/:targetid

   List of all publication for given target id.

   Example: /publications/target/IDP90283
3. /publications/pdb/:pdbid

   List of all publication for given PDB id.

   Example: /publications/pdb/3IJR

Blast

1. POST: /blast/start

   Starts BLAST job

   Payload: { "sequence": "proteinsequence", "seqheader": ">HEADER" }

   Returns JSON with jobid: { message: "BLAST search submitted", time: date, jobid: jobid }

2. POST: /blast/startjoint

   Starts BLAST job against combined database of CSBID and SSGCID targets

3. POST: /blast/pdb

   Starts BLAST job against database of sequences from PDB

4. /blast/status/:jobid

   Returs status of blast job as : "running", "failed", "finished"

5. /blast/results/:jobid

   Returns json with blast results

       {   "message": "Results for job 2023-06-13-100531",
           "time": "2023-06-13",
           "sequence": "MMKLKEMVE...RSRR",
           "results": [
               {
               "idp": "IDP91521",
               "evalue": "4.37e-166",
               "qstart": 1,
               "qend": 240,
               "sstart": 1,
               "send": 240,
               "pident": 100,
               "slen": 1990
               },....
           ]
       }